As Sisko is transporting Dukat to a starbase, their ship is destroyed, and the captain finds himself on a remote planet, dependent on a madman.
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A group of genetically-enhanced misfits comes to the station and convinces Bashir that surrender is the Federation’s only hope against the Dominion.
The mirror universe duplicate of Kira’s dead lover Bareil asks for asylum on the station and begins to fall for Kira.
Before they can marry, Worf must take his friends on a Klingon ritual and Dax must gain the approval of Martok’s wife.
As a Federation fleet attempts to retake the station, Odo and Ziyal must both choose where their loyalties lie.
In order to stop Jem’Hadar reinforcements from entering the Alpha Quadrant, Sisko leads a fleet against the Dominion; meanwhile, Kira tries to halt the Cardassians from within.
Starfleet asks Sisko to take a desk job, leaving Dax to command the Defiant, while Kira plots against the Dominion and Odo reunites with a Founder.
While Alexander struggles to become a Klingon warrior on General Martok’s ship, Ziyal returns to the station to make peace between Dukat and Kira.
Stranded on a planet with a small group of Dominion soldiers, Sisko struggles to protect his crew without compromising his principles.
While Kira and Odo adjust to life on a Cardassian-occupied station, Sisko and crew take a Jem’Hadar ship deep into Cardassian space to destroy the supply of Ketracel-White in the Alpha Quadrant.
With war looming, Dax and O’Brien mine the entrance to the wormhole, Sisko and Kira sabotage the station, Worf joins Martok’s fleet, and Rom and Leeta get married.
Jake wants to buy a rare baseball card to cheer up his father, but has to lie, cheat, manipulate people, and risk an interstellar incident in order to get it.
When O’Brien, Garak, Nog and a salvage team are stranded on a Cardassian station, Garak begins to act like a different person.
When the Maquis claim to have launched cloaked missiles at Cardassia, Sisko tries to avert a war by recruiting Eddington to deactivate the weapons en route.